Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9102055_9102218_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9102055 - 9102218

Intron Length:

164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATATAA

5'SS Class:

major

3'SS Sequence:

TTTTTTGTGGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

GATTTATTATTT

Flanking Amino Acid:

IGKGGANIKKIREESNTKID

Intron Amino Acid Position:

606

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

71.9

28.4

Major BPS

84.7

0.86

74.3

40.7

Major PPT

82.3

0.73

80.6

Minor 5ss

31.9

-2.1

38.4

46.6

Minor BPS

51.6

0.13

1.8

70.82

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047227

9091444 - 9111021

19578

ENSAPLT00000012601

9091444 - 9111657

20214