Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9115269_9115348_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9115269 - 9115348

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCAGCG

5'SS Class:

major

3'SS Sequence:

CTCTCGCTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCAAC

U12 Branch Point Sequence:

GCTGTGCCAACC

Flanking Amino Acid:

VRLGFVIVFEHVVFFIGRVI

Intron Amino Acid Position:

800

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.2

54.5

43.1

Major BPS

48.7

-0

1.3

56.4

38.8

Major PPT

73.7

0.53

0.8

64.7

36.5

Minor 5ss

35.2

-1.7

3.5

48.4

47.3

Minor BPS

37.6

-0.9

2.3

47.19

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012833

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013375

9114948 - 9122478

7531

ENSAPLT00000041186

9114948 - 9122518

7571