Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9115995_9116219_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9115995 - 9116219

Intron Length:

225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTACGCCGG

5'SS Class:

weak_major

3'SS Sequence:

TCCCTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAG

U12 Branch Point Sequence:

TCTGCAGCACCT

Flanking Amino Acid:

VITHLAVSSNAFLIAFTSDF

Intron Amino Acid Position:

722

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.4

45.6

49.6

Major BPS

48.3

-0.1

1.7

59.3

47.1

Major PPT

73.8

0.54

0.7

65.3

30.6

Minor 5ss

37.6

-1.4

3.2

46.1

42.8

Minor BPS

38.3

-0.8

2.5

60.74

48.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012833

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041186

9114948 - 9122518

7571

ENSAPLT00000013375

9114948 - 9122478

7531