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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9121868_9122104_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9121868 - 9122104
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
CTTCCTGCCACG
Flanking Amino Acid:
NVFSDGCTRIDFVLVWETVP
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
78.7
0.65
0.8
72.8
32
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
39
-1
2.4
48.31
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012833
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041186
9114948 - 9122518
7571