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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9121868_9122331_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9121868 - 9122331
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
CTTCCTGCCACG
Flanking Amino Acid:
SERGCCGSLPDFVLVWETVP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
78.7
0.65
0.8
72.8
32
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
39
-1
2.4
48.31
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012833
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013375
9114948 - 9122478
7531