About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9142456_9142917_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9142456 - 9142917
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
63
36
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
88.8
0.87
0.7
81.3
30.7
Minor 5ss
25.8
-2.8
3.1
25.9
36.5
Minor BPS
61.7
0.35
1.6
68.94
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012987
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042826
9127859 - 9143323
15465