Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9151702_9152819_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9151702 - 9152819

Intron Length:

1118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TGAATCCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

GTATCACTAATA

Flanking Amino Acid:

SPEVASMSSDSEDSIVADSP

Intron Amino Acid Position:

474

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

72.7

44.5

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

73.7

0.53

66.3

40.3

Minor 5ss

42.4

-0.8

3.5

64.4

Minor BPS

52.7

0.08

1.9

67.53

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013106

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046212

9145070 - 9162651

17582

ENSAPLT00000013654

9145070 - 9163979

18910