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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9156039_9156712_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9156039 - 9156712
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAAATAT
5'SS Class:
major
3'SS Sequence:
TTTGTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CAATGCTGAAAT
Flanking Amino Acid:
TARDKKDHQEVVVKFIWKER
Intron Amino Acid Position:
1024

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.2
72.2
33.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
73.9
0.54
0.9
73.6
37
Minor 5ss
35.3
-1.7
3.1
47.9
47.7
Minor BPS
48
-0
2
64.52
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013106
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046212
9145070 - 9162651
17582
ENSAPLT00000013654
9145070 - 9163979
18910