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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9161562_9161765_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9161562 - 9161765
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTTCTTCACT
Flanking Amino Acid:
WEEVYFSAEAESSRLRNGSG
Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.4
0.77
0.7
77.7
31.1
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
71.2
0.75
1.7
87.1
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013106
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046212
9145070 - 9162651
17582