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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9167217_9167531_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9167217 - 9167531
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCCAAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TGTTCCCCAAGC
Flanking Amino Acid:
PGFKGRHCELACKKVPHSCT
Intron Amino Acid Position:
1336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
65.1
0.34
1
60.1
35.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
49.4
-0
2.2
68.63
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013362
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033610
9166363 - 9184700
18338
ENSAPLT00000013976
9166363 - 9184700
18338