About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9170929_9171912_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9170929 - 9171912
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTACAAT
U12 Branch Point Sequence:
CCTACAATATTT
Flanking Amino Acid:
VSYTGKSCEKVKRNVNNKND
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.2
35.6
Major BPS
52.8
0.07
1.4
62.8
39.9
Major PPT
86.8
0.83
0.7
84.4
30.5
Minor 5ss
29.8
-2.3
3.6
41.8
45.1
Minor BPS
42.3
-0.5
2
58.56
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013362
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033610
9166363 - 9184700
18338