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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_917196_997710_F

Intron Information:

Intron Rank:
134719
Intron Class:
major
Intron Phase:
Intron Coordinates:
917196 - 997710
Intron Length:
80515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTCCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.3
30.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.4
0.68
0.7
76.1
26
Minor 5ss
33.6
-1.9
2.8
31.7
42.6
Minor BPS
70.9
0.65
1.7
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045235
916930 - 998604
81675