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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9172027_9172144_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9172027 - 9172144
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
ACGCCATTAACG
Flanking Amino Acid:
EGFFGYHCETASDPCFSSPC
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
73
0.52
0.8
65.6
30
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
54.7
0.01
1.7
56.61
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013362
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033610
9166363 - 9184700
18338
ENSAPLT00000013976
9166363 - 9184700
18338