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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9180681_9181377_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9180681 - 9181377
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
CTCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCACAGCC
Flanking Amino Acid:
TFFGGSSFSPVNTFQIVLIT
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
74.4
0.55
0.7
68.7
25
Minor 5ss
34
-1.8
3.4
48.7
47
Minor BPS
40.9
-0.7
1.9
48.53
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013362
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033610
9166363 - 9184700
18338
ENSAPLT00000013976
9166363 - 9184700
18338