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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9236957_9237079_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9236957 - 9237079
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCACTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTCCCCCCACT
Flanking Amino Acid:
LVPDIQEIRVSPIVSKKGYL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.9
0.49
0.8
64.6
30.4
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
46.4
-0.2
2.3
71.84
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025841
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030302
9235930 - 9240347
4418