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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9237273_9237350_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9237273 - 9237350
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TCTCCCCCAGCA
Flanking Amino Acid:
YSEDQQAMLKTPNTFAVCTE
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
71.9
0.49
0.8
67
27.8
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
46
-0.3
2.1
62.3
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025841
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030302
9235930 - 9240347
4418