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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9241712_9241854_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9241712 - 9241854
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CGGTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAG
U12 Branch Point Sequence:
CGGTGCCGAGCC
Flanking Amino Acid:
DLPEPGGAAGGKEAPGGPRL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
43
-0.4
1.6
34.4
42.4
Major PPT
69.9
0.45
1
61.7
40
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
37.6
-0.9
2.1
44.65
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014934
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046920
9241516 - 9250024
8509
ENSAPLT00000043218
9241516 - 9250024
8509
ENSAPLT00000015572
9241516 - 9250024
8509