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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9243589_9244084_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9243589 - 9244084
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TGCTCCCTCACA
Flanking Amino Acid:
TEECQPLPSQISRVSYFAVF
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
75.1
0.56
0.8
68.4
32
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
53.2
0.09
2.1
68.79
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014934
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046920
9241516 - 9250024
8509
ENSAPLT00000043218
9241516 - 9250024
8509
ENSAPLT00000015572
9241516 - 9250024
8509