Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9244192_9244670_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9244192 - 9244670

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGCAG

U12 Branch Point Sequence:

AGGGCTTCAGTT

Flanking Amino Acid:

HLNLIKKFPKGEVVSVEKTV

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

65.9

40.1

Major BPS

45.8

-0.2

1.8

59.7

46.7

Major PPT

75.6

0.58

0.9

72.4

32.2

Minor 5ss

24.4

-2.9

3.1

29.4

43.3

Minor BPS

-0.3

1.7

54.92

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046920

9241516 - 9250024

8509

ENSAPLT00000043218

9241516 - 9250024

8509

ENSAPLT00000015572

9241516 - 9250024

8509