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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9249554_9249818_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9249554 - 9249818
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGGCAT
U12 Branch Point Sequence:
TTTGTCCCGACA
Flanking Amino Acid:
AVNFIVSCLEDKNIQAREGK
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
41.9
-0.5
1.5
45
47.8
Major PPT
74
0.54
1
69.7
36.8
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
47.7
-0.1
2
66.97
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014934
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015572
9241516 - 9250024
8509