About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9249716_9249818_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9249716 - 9249818
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGTCCTC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCCCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGGCAT
U12 Branch Point Sequence:
TTTGTCCCGACA
Flanking Amino Acid:
TSARGCSLYQRIRTSRREKG
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.3
52
45
Major BPS
41.9
-0.5
1.5
45
47.8
Major PPT
74
0.54
1
69.7
36.8
Minor 5ss
37.5
-1.4
3.3
51.4
45.3
Minor BPS
47.7
-0.1
2
66.97
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014934
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043218
9241516 - 9250024
8509
ENSAPLT00000046920
9241516 - 9250024
8509