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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9263557_9266630_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9263557 - 9266630
Intron Length:
3074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTATCT
Flanking Amino Acid:
SFAKKPHVEQITRKFRLNSD
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.9
0.76
0.8
81
30.2
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
85.6
1.19
1.4
100.1
28.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015265
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015926
9262437 - 9282327
19891