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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9268120_9270500_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9268120 - 9270500
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CATTTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTATTCTCATTT
Flanking Amino Acid:
SHVGQPMLNFSFNAFHPDTR
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
62.4
42.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77
0.61
0.8
74
30.7
Minor 5ss
37
-1.5
2.9
46.8
35.4
Minor BPS
50.6
0.1
1.8
69.55
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015265
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015926
9262437 - 9282327
19891