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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9285351_9285851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9285351 - 9285851
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGC
5'SS Class:
major
3'SS Sequence:
AAAAACCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
CAATCTTGAAAA
Flanking Amino Acid:
ILGRKYSVFTEKEEILLDVT
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
56.9
42.1
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
62.7
0.29
1
56
44.2
Minor 5ss
28.6
-2.5
3.6
41.7
45
Minor BPS
53
0.09
1.6
59.78
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015334
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016045
9282701 - 9301110
18410