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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9285924_9288515_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9285924 - 9288515
Intron Length:
2592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATTACAT
Flanking Amino Acid:
FTYRKNFPAIGGTGPTSDTG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
88.7
0.87
0.8
83.2
31.9
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
50.5
0.09
2
71.75
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015334
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016045
9282701 - 9301110
18410