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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9289549_9290322_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9289549 - 9290322
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTTCTTGTGATG
Flanking Amino Acid:
KDSYYSIHQIAQMGVGEGKS
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
74.8
0.56
1
69.3
40.8
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
46.8
-0.3
2
58.52
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015334
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016045
9282701 - 9301110
18410