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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9290396_9291253_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9290396 - 9291253
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTCCCCTCTATA
Flanking Amino Acid:
YGPNTVAQVLKKLATFDTWS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.1
0.63
0.7
72.8
25.6
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
50
-0
1.9
65.11
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015334
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016045
9282701 - 9301110
18410