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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9297621_9298347_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9297621 - 9298347
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTTGTTCATG
Flanking Amino Acid:
NSAHYFIGYVGEELIYLDPH
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.5
0.64
0.8
69.3
37
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
45.7
-0.4
2.4
57.74
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015334
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016045
9282701 - 9301110
18410