Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9298494_9298805_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9298494 - 9298805

Intron Length:

312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGCGTTCT

5'SS Class:

major

3'SS Sequence:

TGTTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TACTTGTTATTT

Flanking Amino Acid:

IAELDPSIAVGFFCNTEEDF

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

70.4

36.1

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

87.2

0.84

0.8

84.8

35.4

Minor 5ss

36.5

-1.5

3.1

47.2

43.5

Minor BPS

47.8

-0

2.2

67.92

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015334

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016045

9282701 - 9301110

18410