Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9299259_9301036_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9299259 - 9301036

Intron Length:

1778

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCCCAC

U12 Branch Point Sequence:

GAGCCAGCACCT

Flanking Amino Acid:

SNPDVLNLTPDSSDADRLER

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

38.2

Major BPS

53.6

0.09

1.2

64.1

33.9

Major PPT

93.2

0.97

0.6

88.8

20.4

Minor 5ss

25.6

-2.8

30.5

42.8

Minor BPS

34.9

-1

2.3

49.12

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015334

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016045

9282701 - 9301110

18410