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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9321097_9322496_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9321097 - 9322496
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGACC
5'SS Class:
major
3'SS Sequence:
CTCTTCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAAATAATT
Flanking Amino Acid:
VQLAMQTYEMVDKHIRRLDA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
0.9
68.3
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.9
76.1
32.5
Minor 5ss
28.2
-2.5
3
32.3
35.9
Minor BPS
48.8
-0
2
76.5
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013706
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014295
9320709 - 9326238
5530