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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9322609_9323561_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9322609 - 9323561
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGCGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
FENPGARSLKKGRSQKDKRG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73.2
32.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
30.2
-2.3
2.8
32.7
36.1
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013706
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014295
9320709 - 9326238
5530