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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9324993_9326195_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9324993 - 9326195
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATTACTATCT
Flanking Amino Acid:
VDLTTKPKGKWFCPRCVQER
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.7
0.74
0.7
78.1
23.8
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
45.9
-0.2
2.1
68.03
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013706
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014295
9320709 - 9326238
5530