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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9334065_9334523_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9334065 - 9334523
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGAG
5'SS Class:
major
3'SS Sequence:
TTTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCTTTTTCACT
Flanking Amino Acid:
KHLKLSCPVRDSHFYVLIET
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.1
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.5
0.87
0.7
86
27.2
Minor 5ss
34.2
-1.8
3.6
46.7
48.6
Minor BPS
59.4
0.38
1.7
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014011
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014606
9328976 - 9338100
9125