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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9334667_9335204_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9334667 - 9335204
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCGAT
U12 Branch Point Sequence:
TCTTTTTTCATC
Flanking Amino Acid:
TVATDDKKIKMLWSLRERIT
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
61.4
0.28
1.3
61.8
44.5
Major PPT
85.1
0.79
0.8
85.8
27.1
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
58.2
0.24
1.7
68.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014011
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014606
9328976 - 9338100
9125