Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9335371_9336653_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9335371 - 9336653

Intron Length:

1283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTTTTCTTACTC

Flanking Amino Acid:

AKNVVGYGHLGDGNLHLNIT

Intron Amino Acid Position:

448

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

35.3

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

88.9

0.88

0.7

81.2

36.5

Minor 5ss

32.5

-2

3.1

33.3

41.7

Minor BPS

72.3

0.68

1.5

81.43

33.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014606

9328976 - 9338100

9125