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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9349883_9349987_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9349883 - 9349987
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGCG
5'SS Class:
major
3'SS Sequence:
CGTCCCCGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
GTGGGCTGAGTG
Flanking Amino Acid:
RGTVYGGYVEWEDMRVLETA
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.5
39.8
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
68.4
0.41
1
61.5
34.9
Minor 5ss
23.9
-3
3.3
29.6
43.4
Minor BPS
39.3
-0.9
2
40.52
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020688
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036090
9349677 - 9351326
1650