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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9353520_9354204_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9353520 - 9354204
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TATCCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAT
U12 Branch Point Sequence:
TCCTCCCTATCC
Flanking Amino Acid:
TLVTSPSVAARQAMCVGRCS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
56.2
0.15
1.3
54.7
42.5
Major PPT
72.3
0.5
0.9
66.1
35.4
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
53.7
0.09
2
66.82
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015072
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018199
9352513 - 9354299
1787