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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9386574_9389741_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9386574 - 9389741
Intron Length:
3168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTGGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AATGCTTTAATT
Flanking Amino Acid:
GLIQQFTAITGASESVGKHM
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.1
0.65
1
72.2
42.7
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
70.5
0.72
1.3
79.18
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015073
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015735
9365297 - 9389814
24518