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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9400274_9401466_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9400274 - 9401466
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTACTTACTC
Flanking Amino Acid:
RINGQDLEEEICVPHPQHQL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
62.9
0.29
1
63
37.4
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
60.2
0.3
1.8
72.11
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015285
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015923
9394552 - 9403129
8578