About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9432068_9432298_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9432068 - 9432298
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTCTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCTTCTCAAAGA
Flanking Amino Acid:
WAMSPGGCKHVQSTADCTGR
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.7
0.65
0.8
77.2
31.6
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
43.6
-0.4
2.2
54.78
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015411
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016056
9429638 - 9434992
5355