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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9439075_9440127_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9439075 - 9440127
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAATGTCA
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GTCCCTGTAATT
Flanking Amino Acid:
MSFLFKNCSIAAEQLK
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
59.5
39.6
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
87.7
0.85
0.7
85.4
29.3
Minor 5ss
28.5
-2.5
4.1
39.1
40.5
Minor BPS
50.5
0.09
2
69.55
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015449
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016087
9438713 - 9440146
1434