About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9441555_9441645_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9441555 - 9441645
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGGTGTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CGGCGCTCACCC
Flanking Amino Acid:
PGLAALLCALQVQAAGRGAA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.6
38.8
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
70.8
0.47
1
61.8
44.4
Minor 5ss
30.4
-2.2
3.1
40.5
38.7
Minor BPS
39.9
-0.7
2.1
44.46
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015450
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016103
9441413 - 9446173
4761