Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9443760_9444858_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9443760 - 9444858

Intron Length:

1099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGATAG

5'SS Class:

major

3'SS Sequence:

CTGTCTTATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTTAT

U12 Branch Point Sequence:

TCTTCCATAGGT

Flanking Amino Acid:

SPEVLVCCCDDHLSMESWKP

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

0.9

66.5

35.2

Major BPS

73.7

0.59

1.2

65.7

43.2

Major PPT

73.8

0.53

0.9

69.9

35.6

Minor 5ss

-2.1

35.1

42.4

Minor BPS

51.6

0.13

2.2

76.77

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015450

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016103

9441413 - 9446173

4761