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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9500950_9501332_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9500950 - 9501332
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TCCTCCCCATGC
Flanking Amino Acid:
AATVTFLTYAAVMTTGAFFN
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
72.1
0.5
0.9
65.7
29.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
40.4
-0.7
2.2
50.79
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015781
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021761
9500063 - 9502459
2397