Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9501133_9501405_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9501133 - 9501405

Intron Length:

273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTTGGTGTT

5'SS Class:

major

3'SS Sequence:

GCACAGGGAGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCACAG

U12 Branch Point Sequence:

TTCGCCTGCACA

Flanking Amino Acid:

QFRAPKQWVKSCGTTSRCTG

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.2

0.34

1.3

70.3

40.1

Major BPS

45.5

-0.2

1.5

54.7

43.1

Major PPT

47.1

-0.1

1.1

35.3

39.6

Minor 5ss

-1.6

3.6

54.7

42.9

Minor BPS

0.02

2.1

67.78

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015781

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042368

9500343 - 9501542

1200

ENSAPLT00000016446

9500343 - 9501542

1200