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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9505010_9505358_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9505010 - 9505358
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CACTTTTAAACA
Flanking Amino Acid:
CHHMRFLQPEVQKVVPSTAV
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.9
0.56
0.7
68.2
25.3
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
52.1
0.06
1.7
58.95
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015784
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016447
9504137 - 9506183
2047