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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9524506_9531894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9524506 - 9531894
Intron Length:
7389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
TQRCLQPQPFALCFAAPPKT
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.2
37.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.9
0.87
0.6
85.3
22.1
Minor 5ss
38.8
-1.3
2.9
50
46.2
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047287
9524373 - 9578570
54198
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000025306
9524373 - 9600762
76390