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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9531723_9531894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9531723 - 9531894
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
MLLKVHTSALCFAAPPKT
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.9
0.87
0.6
85.3
22.1
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026800
9531698 - 9543767
12070