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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9532059_9532251_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9532059 - 9532251
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTGCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTATTGATT
Flanking Amino Acid:
TYLDCIKAISNNEADAISLD
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.9
0.67
0.8
77.7
31.1
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
63.3
0.5
1.6
80.48
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026800
9531698 - 9543767
12070
ENSAPLT00000025306
9524373 - 9600762
76390
ENSAPLT00000047287
9524373 - 9578570
54198
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000044279
9529694 - 9543767
14074